I am NOT enough of a gearhead to have much to offer, but 3 small ideas pop to mind. These might be pretty useless & others will have better input.
- Determining injector function - there are cheap stethoscopes which have a solid metal rod as the "pickup", I see them in the big bins of cheap discount tools sometimes at a Napa, more frequently at an Ace hardware store. Put that rod directly against each injector (hopefully you can access them), and listen carefully - should be able to learn the "normal" clicking sound of a working injector vs anything else, especially no discernible sound would be suspicious. Expect challenges in learning which noise is from the injector vs other noises coming thru the injector from the engine. Autozone sometimes has those parts bins - any chain part store should have ability to find & order a stethoscope. Alternative - people who know how to use the engine electrical diagnostic devices possibly can hook up to all injectors or spark plug wires & the tool can tell which injectors give acceptable electric signals - and which plugs are igniting something. Find someone with old diagnostic devices leftover from the old days (if you're in Denver, I got something, but won't be home this weekend to dig it out - nor do I know how to use it).
- Carefully check the distributor shaft's alignment... Having that off, by tooth or 180 degrees, can sometimes get an engine running although very poorly... I learned that on an old Toyota Corona with an 8RC engine. It's possible to get the camshaft 180 degrees out of sync with the crankshaft - I don't remember details well enough to describe, others will.
- A small thing to try - assuming your engine has plain old fashioned distributor & you rotate it to change timing. when it's running albeit poorly, try manually advancing & retarding on the distributor, see what happens. If it seems to get better when advancing in particular, could be a sign that timing is messed up (which is crankshaft-to-camshaft-to-distributor relationships).
Ouch, I am feeling some of your pain as I recall trial & tribulation from my past. Good luck.